Uganda Reorganizes Military to Press War against Somalia’s al-Shabaab

Andrew McGregor

July 7, 2011

Even as Somalia’s fragile Transitional Federal Government (TFG) threatens to collapse, Uganda is shaking up its military structure in order to sustain what it sees as some hard-won momentum in its struggle with al-Shabaab militants in Mogadishu. Uganda is the driving force behind the African Union’s “peace-enforcement” effort in Somalia – the African Union Mission in Somalia (AMISOM). The AU’s military presence in Somalia began with a lone contingent from the Uganda People’s Defence Forces (UPDF) in 2007. Despite pledges of assistance from several African nations, Uganda continues to supply roughly two-thirds of the 9,000 strong AMISOM force, the remainder consisting of a contingent of Burundian troops. Ugandan officers tend to dominate AMISOM’s highest posts.

Acting Lieutenant Colonel Paddy Ankunda

In the wake of a devastating attack by al-Shabaab that killed Lieutenant Colonel Patrick Sibihwa and 12 other Ugandan soldiers in Mogadishu on June 3, Ugandan president Yoweri Museveni made a secret visit to the Somali capital to assess the situation and raise the morale of Ugandan troops (Observer [Kampala], June 16). Sibihwa was the first high-ranking AMISOM officer to be killed in the fighting and was a 27 year veteran of the UPDF (New Vision, June 12). The death in the Ugandan military hospital from incompetent medical care of seven soldiers injured in the attack has led to an inquiry concerning the possibility some military doctors are working with forged academic qualifications to take advantage of the generous compensation and captain’s rank offered to medical school graduates to serve in the UPDF (Observer [Kampala], July 3).

While Museveni, the commander-in-chief of the armed forces, made sweeping changes in the officer corps, there were important changes in the leadership of the Ugandan AMISOM contingent. Three majors working in Mogadishu, Chris Ogumiraki, Joab Ndahura (1st battalion commander) and Paddy Ankunda were promoted to acting lieutenant colonels (Observer [Kampala], June 29). Ankunda is the public face of AMISOM, acting as its communications director and spokesman.

Major General Nathan Mugisha

In the most important move, Major General Nathan Mugisha was replaced as AMISOM chief by Ugandan chief of artillery and air defense Brigadier Fred Mugisha (no known relation). The appointment takes effect in September, when AMISOM is expected to make its final push to seize Mogadishu’s Bakara Market, an al-Shabaab stronghold. Brigadier Mugisha has been promoted to Major General while Nathan Mugisha will remain in Mogadishu as the deputy Ugandan ambassador. The new AMISOM chief has taken courses in intelligence and counterterrorism in the former Soviet Union (1987-1989) and the United States (Daily Monitor, June 15). The change in overall command follows an earlier change of the commander of the Ugandan contingent of AMISOM. Colonel Michael Ondoga was promoted to Brigadier and sent for studies in the United States and replaced by Colonel Paul Lokech (New Vision [Kampala], June 15). Service in AMISOM is seen as a prestigious posting and an important factor in promotion for Ugandan and Burundian officers (Daily Nation [Nairobi], June 20).

AMISOM will also be supplied with four drone aircraft as part of $45 million worth of military aid going to Uganda and Burundi. The package includes communications equipment, body armor, night vision equipment, generators, surveillance systems and heavy construction equipment. Training will also be made available (AP, June 26).

The unmanned aerial vehicles (UAVs) supplied to AMISOM are small hand-launched aircraft designed for day or night aerial surveillance, target acquisition, and reconnaissance. With a wing-span of 4.5 feet and a weight just over four pounds, the AeroVironment RQ-11 Raven has a flight time of 60 to 90 minutes in an operational radius of 6.2 miles. The drones should provide enhanced intelligence collection in Mogadishu’s urban warfare environment.

The U.S. announcement came six weeks after U.S. Africa Command chief General Carter Ham held talks in Uganda with President Yoweri Museveni regarding the situation in Somalia. According to an official at the U.S. mission in Kampala, the United States has “and will continue to provide equipment, training and some logistical support to Ugandan and Burundian soldiers” (Daily Monitor [Kampala], July 4). In March, Uganda and Burundi pledged to supply another 4,000 troops to the AU mission in Somalia (SunaTimes, July 2; Raxanreeb Radio, July 2).

The increased U.S. support for AMISOM coincides with a new campaign of strikes on al-Qaeda suspects in Somalia by American Predator UAVs. While TFG officials do not appear to be informed prior to U.S. drone attacks, Defense Minister Abdulhakim Haji Faqi has encouraged further strikes: “We welcome it … We urge the U.S. to continue its strikes against al-Shabaab, because if it keeps those strikes up, it will be easier for us to defeat al-Shabaab” (al-Arabiya, July 4).

According to the commander of the Ugandan contingent of AMISOM, Colonel Paul Lokech, the Ugandan military has had to develop new skills in fighting a modern urban counterinsurgency in terrain very unlike that of Uganda:

We are involved in urban-warfare, which is majorly counter-terrorism in an urban terrain. Therefore, the tactics and the way you maneuver here is slightly different from the way you maneuver in an open savannah land. In the savannah, you can move faster. In a built up area like Mogadishu, you must restrict the pace of your movement. Therefore, you have to move very slowly. You must move consciously to minimize casualties (Daily Monitor [Kampala], June 25).

Al-Shabaab has reinforced its positions in Mogadishu with deep trenches, tunnels connecting buildings and barriers made from shipping containers. According to Colongel Paul Lokech, the militants have borrowed their defensive plans from the Chechen defense of Grozny in 1999-2000 (Daily Nation [Nairobi], June 22). UPDF chief General Aronda Nyakairima recently noted: “In Mogadishu even taking half a street takes a lot of planning. We need more soldiers to add to what we have from Burundi and Uganda, more boats to control the ocean, more helicopters” (Daily Nation [Nairobi], June 20). AMISOM has been much criticized in Somalia for indiscriminate fire in civilian neighborhoods, but tries to win popularity through the provision of free medical care and the supply of much needed food and water to the long-suffering residents of Mogadishu.

Ugandan journalists have noted the absence of TFG troops from the frontlines, where Ugandan and Burundian troops are often involved in intense firefights with al-Shabaab militants. Ugandan officers have noted the poor organization of the TFG fighters and their tendency to favor clan above national or other loyalties (Daily Monitor, June 25).

Museveni has also been busy on the diplomatic front in Somalia, mediating the Kampala Accord, designed to break the political deadlock between Somali president Shaykh Sharif Shaykh Ahmad and Speaker of Parliament Sharif Hassan Shaykh Aden. The accord calls for the resignation of Prime Minister Muhammad Abdullahi Muhammad “Farmajo,” a move that appears to have only made things worse, with the popular prime minister refusing to resign and his supporters filling the streets in protest. The transitional government’s mandate expires on August 23. With the TFG’s existence relying mostly on Ugandan support, Yoweri Museveni is increasingly seen as the most powerful individual in determining the future of Somalia.

This article was originally published in the July 7, 2011 issue of the Jamestown Foundation’s Terrorism Monitor.